NXapm_paraprobe_config_tessellator¶
Status:
application definition, extends NXobject
Description:
Configuration of a paraprobe-tessellator tool run in atom probe microscopy.
Symbols:
The symbols used in the schema to specify e.g. dimensions of arrays.
- Groups cited:
NXapm_input_ranging, NXapm_input_reconstruction, NXcg_cylinder_set, NXcg_ellipsoid_set, NXcg_face_list_data_structure, NXcg_hexahedron_set, NXcs_filter_boolean_mask, NXentry, NXmatch_filter, NXprocess, NXspatial_filter, NXsubsampling_filter
Structure:
ENTRY: (required) NXentry
@version: (required) NX_CHAR
Version specifier of this application definition.
definition: (required) NX_CHAR
Official NeXus NXDL schema with which this file was written.
Obligatory value:
NXapm_paraprobe_config_tessellator
program: (required) NX_CHAR
Given name of the program/software/tool with which this NeXus (configuration) file was generated.
@version: (required) NX_CHAR
Ideally program version plus build number, or commit hash or description of ever persistent resources where the source code of the program and build instructions can be found so that the program can be configured ideally in such a manner that the result of this computational process is recreatable in the same deterministic manner.
analysis_identifier: (optional) NX_CHAR
Ideally, a (globally persistent) unique identifier for referring to this analysis.
analysis_description: (optional) NX_CHAR
Possibility for leaving a free-text description about this analysis.
time_stamp: (required) NX_DATE_TIME
ISO 8601 formatted time code with local time zone offset to UTC information included when this configuration file was created.
number_of_processes: (required) NX_UINT {units=NX_UNITLESS}
How many individual analyses should the tool execute.
PROCESS: (required) NXprocess
dataset: (required) NXapm_input_reconstruction
iontypes: (required) NXapm_input_ranging
spatial_filter: (optional) NXspatial_filter
windowing_method: (required) NX_CHAR
CG_ELLIPSOID_SET: (optional) NXcg_ellipsoid_set
CG_CYLINDER_SET: (optional) NXcg_cylinder_set
CG_HEXAHEDRON_SET: (optional) NXcg_hexahedron_set
dimensionality: (required) NX_POSINT
cardinality: (required) NX_POSINT
identifier_offset: (required) NX_INT
hexahedra: (required) NXcg_face_list_data_structure
CS_FILTER_BOOLEAN_MASK: (optional) NXcs_filter_boolean_mask
evaporation_id_filter: (optional) NXsubsampling_filter
iontype_filter: (optional) NXmatch_filter
hit_multiplicity_filter: (optional) NXmatch_filter
ion_to_edge_distances: (optional) NXprocess
The tool enables to inject precomputed distance information for each point which can be used for further post-processing and analysis.
filename: (required) NX_CHAR
Name of an HDF5 file which contains the ion distances. Users are responsible this file and referred to dataset under dataset_name have an ion_distance value for each ion.
@version: (required) NX_CHAR
Version identifier of the file such as a secure hash which documents the binary state of the file to add an additional layer of reproducibility.
dataset_name: (required) NX_CHAR
Absolute HDF5 path to the dataset with distance values for each ion.
tessellating: (required) NXprocess
method: (required) NX_CHAR
Specifies for which points the tool will compute the tessellation. By default, a Voronoi tessellation is computed for all ions in the filtered point cloud.
Obligatory value:
default
has_cell_volume: (required) NX_BOOLEAN
Specifies if the tool should report the volume of each cell.
has_cell_neighbors: (required) NX_BOOLEAN
Specifies if the tool should report the first-order neighbors of each cell.
has_cell_geometry: (required) NX_BOOLEAN
Specifies if the tool should report the facets and vertices of each cell.
has_cell_edge_detection: (required) NX_BOOLEAN
Specifies if the tool should report if the cell makes contact with the tight axis-aligned bounding box about the point cloud. This can be used to identify if the shape of the cell is affected by the edge of the dataset or if cells are deeply enough embedded into the point cloud so that the shape of their cells are not affected by the presence of the boundary.
erosion_distance: (required) NX_FLOAT {units=NX_LENGTH}
Maximum distance for which cells are eroded.
Hypertext Anchors¶
List of hypertext anchors for all groups, fields, attributes, and links defined in this class.
/NXapm_paraprobe_config_tessellator/ENTRY/analysis_description-field
/NXapm_paraprobe_config_tessellator/ENTRY/analysis_identifier-field
/NXapm_paraprobe_config_tessellator/ENTRY/number_of_processes-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/dataset-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/dataset/dataset_name_mass_to_charge-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/dataset/dataset_name_reconstruction-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/dataset/filename-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/dataset/filename@version-attribute
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/evaporation_id_filter-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/hit_multiplicity_filter-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/ion_to_edge_distances-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/ion_to_edge_distances/dataset_name-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/ion_to_edge_distances/filename-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/ion_to_edge_distances/filename@version-attribute
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/iontype_filter-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/iontypes-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/iontypes/filename-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/iontypes/filename@version-attribute
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/iontypes/group_name_iontypes-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_CYLINDER_SET-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_CYLINDER_SET/cardinality-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_CYLINDER_SET/center-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_CYLINDER_SET/height-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_CYLINDER_SET/radii-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_ELLIPSOID_SET-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_ELLIPSOID_SET/cardinality-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_ELLIPSOID_SET/center-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_ELLIPSOID_SET/orientation-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_HEXAHEDRON_SET-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_HEXAHEDRON_SET/cardinality-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CG_HEXAHEDRON_SET/hexahedra-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CS_FILTER_BOOLEAN_MASK-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/CS_FILTER_BOOLEAN_MASK/mask-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/spatial_filter/windowing_method-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating-group
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/erosion_distance-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/has_cell_edge_detection-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/has_cell_geometry-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/has_cell_neighbors-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/has_cell_volume-field
/NXapm_paraprobe_config_tessellator/ENTRY/PROCESS/tessellating/method-field
/NXapm_paraprobe_config_tessellator/ENTRY/program@version-attribute